SNP Profiles matching TSH 516

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 Key

 1234567891011121314
_Input profile
CGATACGGCTACCGAACTAAAGAGACCT
1._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
2._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
3._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
4._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
5._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
6._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
7._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
8._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
9._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
10._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
11._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
12._TSH_516
CGATACGGCTACCGAACTAAAGAGACCT
13._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
14._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
15._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
16._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
17._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
18._GC-08-208-6-04
CGATACGGCTACCGAACTAAAGAGACCT
19._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
20._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
21._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
22._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
23._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
24._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
25._GC-08-209-6-05
CGATACGGCTACCGAACTAAAGAGACCT
26._TSH_516
CGATACGG_ACCGAACTAAAGAGACCT
27._GC-08-208-6-04
CGATACGG_ACCGAACTAAAGAGACCT
28._RUQ_1018
CGATACGGCTACCGAACTAAAGAGACCT
29._RUQ_1018
__ACGGCTACCGAACTAA_AGACCT
30._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
31._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
32._GC-01-002-1-02
CGATACGTCTACCCAACCAAAGAGACCT
33._EET_45_[ECU]
CGATACGT_ACCCAACCAAAGAGACCT
34._GC-03-017-2-06
CGATACGT_ACCCAACCAAAGAGACCT
 1516171819202122232425262728
_Input profile
GTCGACAGGTCGCTCTCGATCTAGCTAG
1._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
2._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
3._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
4._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
5._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
6._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
7._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
8._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
9._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
10._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
11._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
12._TSH_516
GTCGACAGGTCGCTCTCGATCTAGCTAG
13._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
14._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
15._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
16._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
17._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
18._GC-08-208-6-04
GTCGACAGGTCGCTCTCGATCTAGCTAG
19._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
20._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
21._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
22._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
23._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
24._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
25._GC-08-209-6-05
GTCGACAGGTCGCTCTCGATCTAGCTAG
26._TSH_516
GTCG__GTCG_CTCGATCTAGCTAG
27._GC-08-208-6-04
GTCG__GTCG_CTCGATCTAGCTAG
28._RUQ_1018
GTCGACGGGTCGCTCTCGATCTAGCTAG
29._RUQ_1018
GTGGAC_GTCG-____AGCT_
30._GC-01-002-1-02
GTGGACAGGGCGCTCTCGATCTAGCTAG
31._GC-01-002-1-02
GTGGACAGGGCGCTCTCGATCTAGCTAG
32._GC-01-002-1-02
GTGGACAGGGCGCTCTCGATCTAGCTAG
33._EET_45_[ECU]
GTGGACAGGGCGCTCTCGATCTAGCTAG
34._GC-03-017-2-06
GTGGACAGGGCGCTCTCGATCTAGCTAG
 2930313233343536373839   
_Input profile
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
1._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
2._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
3._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
4._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
5._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
6._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
7._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
8._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
9._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
10._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
11._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
12._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
13._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
14._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
15._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
16._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
17._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
18._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
19._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
20._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
21._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
22._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
23._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
24._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
25._GC-08-209-6-05
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
26._TSH_516
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
27._GC-08-208-6-04
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
28._RUQ_1018
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
29._RUQ_1018
___GT___CTCGAG_X_XX_XX_X
30._GC-01-002-1-02
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
31._GC-01-002-1-02
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
32._GC-01-002-1-02
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
33._EET_45_[ECU]
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X
34._GC-03-017-2-06
ATCTCTGTCTACCTCTCGAGCTX_XX_XX_X

Input profile: TSH_516

 
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Mars Center for Cocoa Science, Brazil
Location: 8604 4 > FP
 Dapeng Zhang, 2016

1._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 2
 Dapeng Zhang, 2016

3._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 8
 Dapeng Zhang, 2016

4._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 9
 Dapeng Zhang, 2016

5._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 3 > FP
 Dapeng Zhang, 2016

6._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 1
 Dapeng Zhang, 2016

7._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 2
 Dapeng Zhang, 2016

8._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 3
 Dapeng Zhang, 2016

9._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 6
 Dapeng Zhang, 2016

10._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 7
 Dapeng Zhang, 2016

11._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 9
 Dapeng Zhang, 2016

12._TSH_516

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8605 10
 Dapeng Zhang, 2016

13._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP1
 Mars, 2018

16._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

17._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._TSH_516 GC-08-208-6-04

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

23._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._TSH_516 GC-08-209-6-05

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._TSH_516

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8604 7
 Dapeng Zhang, 2016

27._TSH_516 GC-08-208-6-04

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

28._TSH_516 RUQ_1018

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._TSH_516 RUQ_1018

97.7 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._VB_/REGINA GC-01-002-1-02

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

31._VB_/REGINA GC-01-002-1-02

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

32._VB_/REGINA GC-01-002-1-02

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

33._EET_45_[ECU]

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

34._EET_45_[ECU] GC-03-017-2-06

93.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP645 19TcSNP723 20TcSNP872
21TcSNP891 22TcSNP917 23TcSNP929 24TcSNP953 25TcSNP994
26TcSNP998 27TcSNP1060 28TcSNP1062 29TcSNP1075 30TcSNP1144
31TcSNP1165 32TcSNP1253 33TcSNP1270 34TcSNP1350 35TcSNP1414
36TcSNP1442 37TcSNP1458 38TcSNP1484 39TcSNP1520